Systems and Signals Imperial Mathematics
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Home People Research Join Us Blog	You'll find an informal, popular, discussion of our published work on our blog. Our published papers generally have a corresponding blog article. 2015: Stochastic modelling, Bayesian inference, and new in vivo measurements elucidate the debated mtDNA bottleneck mechanism eLife BLOG article Iain G Johnston, Joerg P Burgstaller, Vitezslav Havlicek, Thomas Kolbe, Thomas Rulicke, Gottfried Brem, Jo Poulton, Nick S Jones Energetic constraints on fungal growth American Naturalist Luke L.M. Heaton, Nick S Jones, Mark Fricker Closed-form stochastic solutions for non-equilibrium dynamics and inheritance of cellular components over many cell divisions Proceedings of the Royal Society A BLOG article Iain G. Johnston, Nick S. Jones What is the function of mitochondrial networks? (supplement) BioEssays BLOG article Hanne Hoitzing, Iain G. Johnston, Nick S. Jones Spectra and cycle structure of trophically coherent graphs arXiv Samuel Johnson, Nick S. Jones 2014: The mitoflash probe cpYFP does not respond to superoxide - Brief Communication Arising Nature BLOG article Markus Schwarzlander, S.Wagner, Y.Ermakova, V.V.Belousov, R.Radi, J.S.Beckman, G.R.Buettner, N.Demaurex, M.R.Duchen, H.J.Forman, M.D.Fricker, D.Gems, A.P. Halestrap, B.Halliwell, U.Jakob, Iain G. Johnston, Nick S. Jones, D.C. Logan, B.Morgan, F.L.Muller, D.G.Nicholls, S.James Remington, P.T.Schumacker, C.C.Winterbourn, L.J.Sweetlove, A.J.Meyer, T.P.Dick and Michael P. Murphy Explicit tracking of uncertainty increases the power of quantitative rule-of-thumb reasoning in cell biology (CaladisWebsite, Nature Toolbox examples) Biophysical Journal BLOG article Iain G. Johnston, Ben Rickett, Nick S. Jones FRIENDLY regulates mitochondrial distribution, fusion, and quality control in Arabidopsis Plant Physiology BLOG article Amr El Zawily, Markus Schwarzlsnder, Iris Finkemeier, Iain G Johnston, Abdelilah Benamar,Yongguo Cao, Clemence Gissot, Andreas Meyer, Ken Wilson, Raju Datla, David Macherel, Nick S. Jones and David Logan How modular structure can simplify tasks on networks: parameterizing graph optimization by fast local community detection Proceedings of the Royal Society A Binh-Minh Bui-Xuan, Nick S. Jones mtDNA Segregation in Heteroplasmic Tissues Is Common In Vivo and Modulated by Haplotype Differences and Developmental Stage (supplement) Cell Reports BLOG article Joerg Patrick Burgstaller, Iain G. Johnston, Nick S. Jones, J. Albrechtova, T. Kolbe, C. Vogl, A. Futschik, C. Mayrhofer, D. Klein, S. Sabitzer, M. Blattner, C. Gully, J. Poulton, T. Rulicke, J. Pialek, R. Steinborn, G. Brem Highly comparative, feature-based, time-series classification (supplement) IEEE Transactions in KDE BLOG article Ben Fulcher, Nick S. Jones 2013: Highly Comparative Time-Series Analysis: the empirical structure of time series and their methods (super supplement, rest of supplement) Journal of the Royal Society Interface BLOG article Ben Fulcher, Max Little, Nick S. Jones Signal Processing and Inference for the Physical Sciences (volume) Philosophical Transactions of the Royal Society A BLOG article Editors Nick S. Jones and Thomas J. Maccarone Inference for the Physical Sciences (introduction) Phil. Trans. R. Soc. A. 371 20120493 BLOG article Nick S. Jones and Thomas J. Maccarone Signal processing for molecular and cellular biological physics Phil. Trans. R. Soc. A. 371 20110546 Max Little and Nick S. Jones Function-valued traits in evolution (supplement) Journal of the Royal Society Interface BLOG article Pantelis Z. Hadjipantelis, Nick S. Jones, John Moriarty, David Springate, Christopher G. Knight. Evolutionary Inference for Functional Data: Using Gaussian Processes on Phylogenies to Study Shape Evolution (journal version, supplement) Journal of the Royal Society Interface, 10, 20120616 BLOG article BLOG Public Experiment Nick S. Jones, John Moriarty 2012: Highly Comparative Fetal Heart Rate Analysis (conference paper) Engineering in Medicine and Biology Society (EMBC), 2012 Annual International Conference of the IEEE Ben Fulcher, Alexandra Georgieva, Chris Redman and Nick S. Jones What Evidence is There for the Homology of Protein-Protein Interactions? (supplement) PLoS Computational Biology 8(9): e1002645 BLOG article Anna Lewis, Nick S Jones, Mason Porter, Charlotte Deane Advection, diffusion and delivery over a network (supplement) Phys. Rev. E 86, 021905 BLOG article Luke L. M. Heaton, Eduardo Lopez, Philip K. Maini, Mark D. Fricker, Nick S. Jones Analysis of fungal networks Fungal Biology Reviews doi:10.1016/j.fbr.2012.02.001. Luke L. M. Heaton, Boguslaw Obara, Vincente Grau, Nick S. Jones, Toshi Nakagaki, Lynne Boddy, Mark D. Fricker Taxonomies of Networks from Community Structure (supplement) Phys. Rev. E 86, 036104 BLOG article Jukka-Pekka Onnela, Daniel J. Fenn, Stephen Reid, Mason A. Porter, Peter J. Mucha, Mark D. Fricker, Nick S. Jones Mitochondrial Variability as a Source of Extrinsic Cellular Noise (supplement) PLoS Computational Biology 8(3): e1002416. doi:10.1371/journal.pcbi.1002416 BLOG article Iain G. Johnston, Bernadett Gaal, Ricardo Pires das Neves, Tariq Enver, Francisco J. Iborra, Nick S. Jones Pulsing of Membrane Potential in Individual Mitochondria: A Stress-Induced Mechanism to Regulate Respiratory Bioenergetics in Arabidopsis Plant Cell 24, 1188-1201 BLOG article M. Schwarzlander, D. C. Logan, I. G. Johnston, N. S. Jones, M. D. Fricker and L. J. Sweetlove Dynamical Clustering of Exchange Rates Quantitative Finance 12, 1493-1520 Daniel J. Fenn, Mason A. Porter, Peter J. Mucha, Mark McDonald, Stacy Williams, Neil F. Johnson, Nick S. Jones 2011: Phylogenetic inference for function-valued traits: speech sound evolution Trends in Evolution and Ecology (free version and non-free weblink) 27, 160-166 BLOG article John Aston, Dorothy Buck, John Coleman, Colin Cotter, Nick S. Jones, Vincent Macaulay, Norman Macleod, John Moriarty, Andrew Nevins. Steps and bumps: precision extraction of discrete states of molecular machines using physically-based, high-throughput time series analysis Biophysical Journal 2, 477 BLOG article M.A. Little, B.C. Steel, F. Bai, Y. Sowa, T. Bilyard, D.M. Mueller, R.M. Berry, N.S. Jones Generalized methods and solvers for noise removal from piecewise constant signals. I. Background theory Proceedings of the Royal Society A, 467, 2088 BLOG article M.A. Little N.S. Jones Generalized methods and solvers for noise removal from piecewise constant signals. II. New Methods Proceedings of the Royal Society A, 467, 3115 BLOG article M.A. Little N.S. Jones Temporal evolution of financial-market correlations Phys. Rev. E 84, 026109 BLOG article D.J. Fenn, M.A. Porter, S. Williams, M. McDonald, N.F. Johnson and N.S. Jones 2010: Connecting Variability in Global Transcription Rate to Mitochondrial Variability PLoS Biology 8(12): e1000560 doi:10.1371/journal.pbio.1000560 BLOG article Ricardo Pires das Neves, Nick S. Jones, Lorena Andreu, Rajeev Gupta,  Tariq Enver, Francisco J. Iborra Growth-induced mass flows in fungal networks Proceedings of the Royal Society B 277, 3265 BLOG article Luke Heaton, Eduardo Lopez, Philip K. Maini, Mark D. Fricker, Nick S. Jones Revisiting Date and Party Hubs: Novel Approaches to Role Assignment in Protein Interaction Networks PLoS Computational Biology 6(6):e1000817 BLOG article Sumeet Agarwal, Charlotte M. Deane, Mason A. Porter, Nick S. Jones The Function of Communities in Protein Interaction Networks at Multiple Scales BMC Systems Biology 4, 100 BLOG article Anna C. F. Lewis, Nick S. Jones, Mason A. Porter, Charlotte M. Deane Structural dynamics and robustness of food webs. Ecology Letters 13, 891 doi: 10.1111/j.1461-0248.2010.01485.x Phillip P. A. Staniczenko, Owen T. Lewis, Nick S. Jones, Felix Reed-Tsochas Sparse bayesian step-filtering for high-throughput analysis of molecular machine dynamics (conference paper) Proceedings IEEE ICASP 2010 p4162 Max A. Little and Nick S. Jones 2009-2008: Dynamic communities in multichannel data Chaos 19, 033119 (2009) BLOG article Daniel J. Fenn, Mason A. Porter, Mark McDonald, Stacy Williams, Neil F. Johnson, Nick S. Jones Master-equation analysis of accelerating networks Phys. Rev. E 79, 056101 (2009) David M.D. Smith, Jukka-Pekka Onnela, Nick S. Jones Rapidly detecting disorder in rhythmic biological signals: A spectral entropy measure to identify cardiac arrhythmias Phys. Rev. E 79, 011915 (2009) Phillip P. A. Staniczenko, Chiu Fan Lee, Nick S. Jones Using the Memories of Multiscale Machines to Characterize Complex Systems Phys. Rev. Lett. 100, 208702 (2008) Nick S. Jones Key Distillation and the Secret-Bit Fraction IEEE Transactions Information Theory, 54, 680 (2008) Nick S. Jones and Lluis Masanes Early work: Photon Frequency Mode Matching using Acousto-Optic Frequency Beam Splitters Phys. Rev. A 73, 033813 (2006) Nick S. Jones and T.M. Stace Interconversion of Nonlocal Correlations Phys. Rev. A 72, 052312 (2005) Nick S. Jones and Lluis Masanes Mediated Digraphs and Quantum Nonlocality Discrete Appl. Math. 150, 41 (2005) Gregory Gutin, Nick S. Jones, Arash Rafiey, Simone Severini, Anders Yeo The Extent of Multi-particle Quantum Non-locality Physical Review A 71, 042329 (2005) Nick S. Jones, Noah Linden, Serge Massar Parts of Quantum States Phys. Rev. A 71, 012324 (2005) Nick S. Jones and Noah Linden Back to:           Systems and Signals