Soil, microbes and pasties

Last week I was pleased to have another day of fieldwork, this time in the New Forest National Park in south England. The New Forest includes one of the largest areas of pasture, heathland and forest in south east England and the site we visited is Whitley Wood, a oak-beech wood pasture woodland with grazing deer and ponies. The Natural History Museum Soil Biodiversity Group have been sampling at this site for soil and leaf litter invertebrates nearly every month since 2002.

Whitley Wood
Whitley Wood

A 100 meter transect line is laid at random in the forest and a sample is taken every seven meters. This comprises a measure of soil moisture and temperature and what plants are growing in a 1 m quadrat. Then a pit is dug and any earthworms collected and the leaf litter from the 1 meter square is sieved and put into bags to take back to the Museum. From this month onwards we will also be collecting soil samples which I will be analysing for microbial DNA, I will then use this to investigate how microbe diversity changes during the seasons and the relationship with invertebrates.

Bags of leaf litter after sieving
Bags of leaf litter after sieving

Using a syringe barrel as a soil corer I took four samples per quadrat which were then mixed together in a tube, both syringes and tubes had to be sterile to avoid contamination with microbes from other places and each quadrat had its own tube – this will also give an idea of how variable soil microbes are across the woodland.

Soil cores from Whitley Wood - one every 7 m over a 100 m transect
Soil cores from Whitley Wood – there is one for every 7 m over a 100 m transect

Whitley Wood fieldwork is popular with Soil Biodiversity Group volunteers and students because at the end of the fieldwork we visit a pastry shop for lunch. Then its back to the Museum to process the samples.

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Post-fieldwork pasty and cake
The most important job of the day! Soil Biodiversity Group head, Dr Paul Eggleton buys us lunch

To extract the invertebrates the sieved leaf litter is placed into Winkler bags, these are made up of two parts – the inner bags are made of mesh and look a bit like laundry bags, these are then suspended in a fabric funnel which is hung up in a room for three days. The top of the bag is tied up to stop the invertebrates escaping and at the bottom there is a bottle of alcohol. As the leaf litter dries out the invertebrates move down the funnel into the bottle to be preserved for later counting and identification.

Filling the Winkler bags with sieved leaf litter
Filling the Winkler bags with sieved leaf litter

Of course this time I also had my soil samples to store. The DNA extraction and analysis will require travelling to my co-supervisor’s laboratory at Imperial College Silwood Park so rather than going every month I am storing them up to process in bulk. To preserve the microbes they are stored in a freezer at -8o°C ready for when I need them.

My first lot of soil samples stored in the freezer
My first lot of soil samples stored in the freezer

2 comments for “Soil, microbes and pasties

  1. […] I’ve been a bit lax with my blogging over the last few weeks as I have been busy writing and submitting my early stage assessment – a report of what I have done so far in my PhD and what I plan to do next. This will be followed up with a short viva from my panel – eek! So it was good to get a day out doing outreach at Imperial College Silwood Park a few days after submitting. Silwood Park is Imperial’s postgraduate campus near Ascot, Berkshire, with research and teaching in ecology, evolution, and conservation. One of my supervisors is based there, so I occasionally visit for meetings and eventually will be going there to extract and analyse microbial DNA from my soil samples. […]

  2. Lou says:

    The pasties were delicious!

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